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Lab Scientist III - Jobs in Calgary, AB

Job LocationCalgary, AB
EducationNot Mentioned
SalaryNot Disclosed
IndustryNot Mentioned
Functional AreaNot Mentioned
Job TypeFull Time

Job Description

Your Opportunity:The provincial Molecular Pathology Program of Alberta Precision Laboratories (APL) is seeking a Bioinformatics Lab Scientist with expertise in Next Generation Sequencing (NGS) to participate in our expanding cancer genomics program. In particular, the program has several NGS-based assays to identify genetic changes in clinical samples derived from cancer patients seen by the Alberta-wide cancer clinics and major centers. The Scientist will work with pathologists, wet lab scientists, and operational and support staff in APL and Information Technology staff of Alberta Health Services (AHS), performing , among others, the essential responsibilities listed below: Development, deployment, and maintenance of informatics pipelines to analyze multiomic data (genome, epigenome, methylome, and transcriptome) for biomarker discovery and clinical testing. Development, deployment, and management of an integrated multiomic database. Development, deployment, and management of an automated reporting pipeline for multiomic results generated in clinical testing. Assist and support laboratory personnel and end-users for routine use of bioinformatics pipelines. Participate as a key member of a multi-functional team including pathologists, clinicians, and scientists that spans discovery, innovation, development, and clinical testing. Uphold APL mission and values through accountability, innovation, integrity, quality, and teamwork. Support and comply with APL’s Quality Management System policies and procedures.Description:As a Laboratory Scientist III you will be a highly skilled individual working as part of a multi-disciplinary team supporting procedural development and modification, documentation and implementation of research activities into the operation of a clinically oriented molecular laboratory. This position exercises independence in method development and new approaches to patient testing. In addition, the Laboratory Scientist III may perform routine and complex patient testing and data analysis/interpretation using a wide array of molecular methods, analytical platforms, and bioinformatic software programs.

  • Classification: Lab Scientist III
  • Union: HSAA FAC PROF/TECH
  • Department: Molecular Diagnostics05
  • Primary Location: Diagnostic Scientific Centre
  • Multi-Site: Not Applicable
  • FTE: 1.00
  • Posting End Date: 27-MAY-2022
  • Employee Class: Regular Full Time
  • Date Available: 06-JUN-2022
  • Hours per Shift: 7.75
  • Length of Shift in weeks: 2
  • Shifts per cycle: 10
  • Shift Pattern: Days
  • Days Off: Saturday/Sunday
  • Minimum Salary: $45.62
  • Maximum Salary: $60.71
  • Vehicle Requirement: Not Applicable
Required Qualifications:Completion of a doctoral degree in Genetics, Computational Biology, Biostatistics or Bioinformatics.Additional Required Qualifications:Master’s level degree in Bioinformatics, Computational Biology, Genetics, Statistics, Data Mining, Biomedical Engineering, or similar field of study with 2+ years of experience in software and web interface programming, bioinformatics, statistics, and data mining may be considered for equivalency. High proficiency with Linux shell scripting. Proficiency in python and R required, and one or more programming languages such as Perl, Java, or C/C++ desirable, as well as willingness to learn new programming languages as necessary for data analysis and visualization. Experience with open-source tools for genetic analyses. Proficiency with both Ion torrent and Illumina sequencing data demonstrated through publicly accessible sources such as publications. Working knowledge of version control and code base management using git and code repository tools (e.g. gitlab, bitbucket, github).Preferred Qualifications:Prior experience working in precision medicine and in a clinical-grade environment. 1+ years of experience with next-generation sequencing data analysis. Experience with public databases (e.g., NCBI, UCSC, gnomAD, etc) and relational databases (Postgresql, MySql, etc.). Experience with using the Linux OS, command line tools, and bash scripting. Experience with resources for high throughput computing. Design and implement scripts to automate workflow in the clinical molecular pathology lab.Please note:All postings close at 23:59 of the posting end date indicated.Hiring Requirements:The following must be provided prior to your first day of work:Security Screening: Satisfactory criminal record check and/or Vulnerable Sector Search. Additionally, all employees have an ongoing duty to disclose any charges or convictions that may occur during their employment with APL.COVID-19 Immunization: Proof of full immunization against COVID-19. Full immunization status is achieved when 14 days have passed after the second dose of a two-dose vaccine, or the first dose of a single-dose vaccine. See our Frequently Asked Quesitons for additional information.Quick Apply
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